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Fischer, M., Kao, D., Kassam, Z., Smith, J., Louie, T., Sipe, B., … & Allegretti, J. R. (2017). Stool Donor Body Mass Index Does Not Affect Recipient Weight After a Single Fecal Microbiota Transplantation for C. difficile Infection. Clinical gastroenterology and hepatology: the official clinical practice journal of the American Gastroenterological Association.

Chu ND, Crothers JW, Nguyen LTT, Kearney SM, Smith MB, Kassam Z, Collins C, Xavier R, Moses PL, Alm EJ. Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease. mBio. 2021 Aug 31;12(4):e0097521. doi: 10.1128/mBio.00975-21. Epub 2021 Jul 20. PMID: 34281401; PMCID: PMC8406238.

Singh P, Alm EJ, Kelley JM, Cheng V, Smith M, Kassam Z, Nee J, Iturrino J, Lembo A. Effect of antibiotic pretreatment on bacterial engraftment after Fecal Microbiota Transplant (FMT) in IBS-D. Gut Microbes. 2022 Jan-Dec;14(1):2020067. doi: 10.1080/19490976.2021.2020067. PMID: 35014601; PMCID: PMC8757476.

Chauhan U, Popov J, Farbod Y, Kalantar M, Wolfe M, Moayyedi P, Marshall JK, Halder S, Kaasalainen S. Fecal Microbiota Transplantation for the Treatment of Ulcerative Colitis: A Qualitative Assessment of Patient Perceptions and Experiences. J Can Assoc Gastroenterol. 2021 Mar 26;4(6):e120-e129. doi: 10.1093/jcag/gwab007. PMID: 34877470; PMCID: PMC8643654.

Claytor JD, El-Nachef N. Fecal microbial transplant for inflammatory bowel disease. Curr Opin Clin Nutr Metab Care. 2020 Sep;23(5):355-360. doi: 10.1097/MCO.0000000000000676. PMID: 32618725.

Crothers JW, Chu ND, Nguyen LTT, Phillips M, Collins C, Fortner K, Del Rio-Guerra R, Lavoie B, Callas P, Velez M, Cohn A, Elliott RJ, Wong WF, Vo E, Wilcox R, Smith M, Kassam Z, Budd R, Alm EJ, Mawe GM, Moses PL. Daily, oral FMT for long-term maintenance therapy in ulcerative colitis: results of a single-center, prospective, randomized pilot study. BMC Gastroenterol. 2021 Jul 8;21(1):281. doi: 10.1186/s12876-021-01856-9. PMID: 34238227; PMCID: PMC8268596.

Dalal RS, Allegretti JR. Diagnosis and management of Clostridioides difficile infection in patients with inflammatory bowel disease. Curr Opin Gastroenterol. 2021 Mar 3. doi: 10.1097/MOG.0000000000000739. Epub ahead of print. PMID: 33654015.

Dalal RS, Allegretti JR. Fecal Microbiota Transplantation for Chronic Pouchitis: Promising Novel Therapeutic or Lost Cause? Inflamm Bowel Dis. 2021 Jan 27:izab002. doi: 10.1093/ibd/izab002. Epub ahead of print. PMID: 33501941.

Lima S, Gogokhia L, Viladomiu M, Chou L, Putzel G, Jin W, Pires S, Guo CJ, Gerardin Y, Crawford CV, Jacob V, Scherl E, Brown SE, Hambor J, Longman R. Transferable IgA-coated Odoribacter splanchnicus in Responders to Fecal Microbiota Transplantation for Ulcerative Colitis Limits Colonic Inflammation. Gastroenterology. 2021 Oct 1:S0016-5085(21)03610-6. doi: 10.1053/j.gastro.2021.09.061. Epub ahead of print. PMID: 34606847.

Allegretti JR, Kelly CR, Grinspan A, Mullish BH, Hurtado J, Carrellas M, Marcus J, Marchesi JR, McDonald JAK, Gerardin Y, Silverstein M, Pechlivanis A, Barker GF, Miguens Blanco J, Alexander JL, Gallagher KI, Pettee W, Phelps E, Nemes S, Sagi SV, Bohm M, Kassam Z, Fischer M. Inflammatory Bowel Disease Outcomes Following Fecal Microbiota Transplantation for Recurrent C. difficile Infection. Inflamm Bowel Dis. 2020 Nov 6:izaa283. doi: 10.1093/ibd/izaa283. Epub ahead of print. PMID: 33155639.

Cheng, Y., & Fischer, M. (2020). Fecal Microbiota Transplantation for Ulcerative Colitis. Are We Ready for Primetime?. Gastroenterology Clinics Of North America, 49(4), 739-752. doi: 10.1016/j.gtc.2020.08.006

Loris R. Lopetuso, Gianluca Ianiro, Jessica R. Allegretti, Stefano Bibbò, Antonio Gasbarrini, Franco Scaldaferri & Giovanni Cammarota (2020) Fecal transplantation for ulcerative colitis: current evidence and future applications. Expert Opinion on Biological Therapy, 20(3). DOI: 10.1080/14712598.2020.1733964

Olesen, S., & Gerardin, Y. (2020). Re-Evaluating the Evidence for Faecal Microbiota Transplantation ‘Super-Donors’ in Inflammatory Bowel Disease. Journal Of Crohn’s And Colitis, 15(3), 453-461. doi: 10.1093/ecco-jcc/jjaa170

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Gutin, L., Piceno, Y., Fadrosh, D., Lynch, K., Zydek, M., & Kassam, Z. et al. (2019). Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile. United European Gastroenterology Journal, 7(6), 807-814. doi:10.1177/2050640619845986

Herfarth, H., Barnes, E. L., Long, M. D., Isaacs, K. L., Leith, T., Silverstein, M., … Kassam, Z. (2019). Combined Endoscopic and Oral Fecal Microbiota Transplantation in Patients with Antibiotic-Dependent Pouchitis: Low Clinical Efficacy due to Low Donor Microbial Engraftment. Inflammatory Intestinal Diseases, 1–6. doi:10.1159/000497042

Selvig, D., Piceno, Y., Terdiman, J., Zydek, M., Umetsu, S., & Balitzer, D. et al. (2019). Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study. Digestive Diseases And Sciences. doi:10.1007/s10620-019-05715-2

Ibraheim, H., Giacomini, C., Kassam, Z., Dazzi, F., & Powell, N. (2018). Advances in mesenchymal stromal cell therapy in the management of Crohn’s disease. Expert review of Gastroenterology & Hepatology, 12(2), 141-153.

Allegretti, J., Eysenbach, L. M., El-Nachef, N., Fischer, M., Kelly, C., & Kassam, Z. (2017). The Current Landscape and Lessons from Fecal Microbiota Transplantation for Inflammatory Bowel Disease: Past, Present, and Future. Inflammatory bowel diseases, 23(10), 1710-1717.

Borren, N. Z., Conway, G., Garber, J. J., Khalili, H., Budree, S., Mallick, H., … & Ananthakrishnan, A. N. (2017). Differences in Clinical Course, Genetics, and the Microbiome Between Familial and Sporadic Inflammatory Bowel Diseases. Journal of Crohn’s and Colitis, 12(5), 525-531.

El-Nachef, N., Kassam, Z., Piceno, Y. M., Ablaza, A. J., Zydek, M., Elliott, R. J., … & Somsouk, M. (2017). Does Rifaximin Prior to Fecal Microbiota Transplantation Improve Clinical Outcomes Compared to Microbiome Restoration Alone in Ulcerative Colitis? a Cohort Study Evaluating the Impact of Non-Absorbable Antibiotic Pretreatment. Gastroenterology, 152(5), S1008-S1009.

El-Nachef, N., Piceno, Y. M., Kassam, Z., Ablaza, A. J., Zydek, M., Lynch, K., … & Lynch, S. (2017). The Role of Fecal Microbiota Transplantation in Ulcerative Colitis and Crohn’s Disease: Results from a Parallel Inflammatory Bowel Disease Cohort Study. Gastroenterology, 152(5), S1008.

El-Nachef, N., Piceno, Y. M., Kassam, Z., Zydek, M., Ablaza, A. J., Leith, T., … & Lynch, S. (2017). Fecal Microbiota Transplantation is Safe and Effective in Chronic Pouchitis Patients. Gastroenterology, 152(5), S1009.

Fischer, M., Bittar, M., Papa, E., Kassam, Z., & Smith, M. (2017). Can you cause inflammatory bowel disease with fecal transplantation? A 31-patient case-series of fecal transplantation using stool from a donor who later developed Crohn’s disease. Gut microbes, 8(3), 205-207.

Jacob, V., Crawford, C., Cohen-Mekelburg, S., Viladomiu, M., Putzel, G. G., Schneider, Y., … & Ajami, N. J. (2017). Single delivery of high-diversity fecal microbiota preparation by colonoscopy is safe and effective in increasing microbial diversity in active ulcerative colitis. Inflammatory bowel diseases, 23(6), 903-911.

Kulaylat, A. S., Kassam, Z., Hollenbeak, C. S., & Stewart Sr, D. B. (2017). A Surgical Clostridium-Associated Risk of Death Score Predicts Mortality After Colectomy for Clostridium difficile. Diseases of the Colon & Rectum, 60(12), 1285-1290.

Narula, N., Kassam, Z., Yuan, Y., Colombel, J. F., Ponsioen, C., Reinisch, W., & Moayyedi, P. (2017). Systematic review and meta-analysis: Fecal microbiota transplantation for treatment of active ulcerative colitis. Inflammatory bowel diseases, 23(10), 1702-1709.

Piceno, Y. M., El-Nachef, N., Kassam, Z., Smith, M., Lynch, K., Zydek, M., … & Lynch, S. (2017). Fecal Microbiota Transplantation Differentially Influences the Gut Microbiota of Clostridium Difficile Infection and Ileal Pouch Anal Anastomosis Patients. Gastroenterology, 152(5), S1006.

Qazi, T., Amaratunga, T., Barnes, E. L., Fischer, M., Kassam, Z., & Allegretti, J. R. (2017). The risk of inflammatory bowel disease flares after fecal microbiota transplantation: Systematic review and meta-analysis. Gut microbes, 8(6), 574-588.

Fischer, M., Kao, D., Kelly, C., Kuchipudi, A., Jafri, S. M., Blumenkehl, M., … & Cook, G. (2016). Fecal microbiota transplantation is safe and efficacious for recurrent or refractory Clostridium difficile infection in patients with inflammatory bowel disease. Inflammatory bowel diseases, 22(10), 2402-2409.

Acharya C, Bajaj JS. Chronic Liver Diseases and the Microbiome: Translating Our Knowledge of Gut Microbiota to Management of Chronic Liver Disease. Gastroenterology. 2020 Nov 27:S0016-5085(20)35504-9. doi: 10.1053/j.gastro.2020.10.056. Epub ahead of print. PMID: 33253686.

Bajaj, J., Gavis, E., Fagan, A., Wade, J., Thacker, L., & Fuchs, M. et al. (2020). A Randomized Clinical Trial of Fecal Microbiota Transplant for Alcohol Use Disorder. Hepatology. doi: 10.1002/hep.31496

Bajaj JS, Khoruts A. Microbiota changes and intestinal microbiota transplantation in liver diseases and cirrhosis. J Hepatol. 2020 May;72(5):1003-1027. doi: 10.1016/j.jhep.2020.01.017. Epub 2020 Jan 28. PMID: 32004593.

Bajaj JS, Shamsaddini A, Fagan A, Sterling RK, Gavis E, Khoruts A, Fuchs M, Lee H, Sikaroodi M, Gillevet PM. Fecal Microbiota Transplant in Cirrhosis Reduces Gut Microbial Antibiotic Resistance Genes: Analysis of Two Trials. Hepatol Commun. 2020 Nov 21;5(2):258-271. doi: 10.1002/hep4.1639. PMID: 33553973; PMCID: PMC7850310.

Cheng YW, Alhaffar D, Saha S, et al. Fecal Microbiota Transplantation is Safe and Effective in Patients with Clostridioides difficile Infection and Cirrhosis [published online ahead of print, 2020 Jul 6]. Clin Gastroenterol Hepatol. 2020;S1542-3565(20)30915-0. doi:10.1016/j.cgh.2020.06.051

Allegretti, J., Kassam, Z., Carrellas, M., Mullish, B., Marchesi, J., & Pechlivanis, A. et al. (2019). Fecal Microbiota Transplantation in Patients With Primary Sclerosing Cholangitis. The American Journal Of Gastroenterology, 1. doi:10.14309/ajg.0000000000000115

Bajaj, JS., Fagan, A., Gavis, EA., Kassam, Z., Sikaroodi, M., Gillevet, P. (2019). Long term outcomes after Fecal Microbiota Transplant in Cirrhosis. Gastroenterology, doi: https://doi.org/10.1053/j.gastro.2019.01.033

Bajaj, J., Salzman, N., Acharya, C., Sterling, R., White, M., & Gavis, E. et al. (2019). Fecal Microbial Transplant Capsules Are Safe in Hepatic Encephalopathy: A Phase 1, Randomized, Placebo‐Controlled Trial. Hepatology, 70(5), 1690-1703. doi:10.1002/hep.30690

Bajaj, J. S., Kakiyama, G., Savage, T., Takei, H, Kassam, Z. A., Fagan, A., … & Gillevet, P. M. (2018). Antibiotic‐Associated Disruption of Microbiota Composition and Function in Cirrhosis Is Restored by Fecal Transplant. Hepatology, 68: 1549-1558.

Bajaj, J. S., Kassam, Z., Fagan, A., Gavis, E. A., Liu, E., Cox, I. J., … & Williams, R. (2017). Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial. Hepatology.

Bajaj, J. S., Kassam, Z., Fagan, A., Gavis, E., Liu, E. J., Kheradman, R., … & Alm, E. (2017). Fecal microbiota transplant using a precision medicine approach is safe, Associated with lower hospitalization risk and improved cognitive function in recurrent hepatic encephalopathy. Gastroenterology, 152(5), S906.

Kumar, V., Vieira, S. M., Ruff, W., Dehner, C., Kassam, Z., Boyer, J. L., … & Kriegel, M. (2017, October). The Gut Microbiome in Autoimmune Hepatitis Links to Disease Progression and is Significantly Different from Lupus and Healthy Controls. HEPATOLOGY (Vol. 66, pp. 189A-189A).

Allegretti JR, Kassam Z, Hurtado J, Marchesi JR, Mullish BH, Chiang A, Thompson CC, Cummings BP. Impact of fecal microbiota transplantation with capsules on the prevention of metabolic syndrome among patients with obesity. Hormones (Athens). 2021 Jan 9. doi: 10.1007/s42000-020-00265-z. Epub ahead of print. PMID: 33420959.

Proença IM, Allegretti JR, Bernardo WM, de Moura DTH, Ponte Neto AM, Matsubayashi CO, Flor MM, Kotinda APST, de Moura EGH. Fecal microbiota transplantation improves metabolic syndrome parameters: systematic review with meta-analysis based on randomized clinical trials. Nutr Res. 2020 Nov;83:1-14. doi: 10.1016/j.nutres.2020.06.018. Epub 2020 Jul 3. PMID: 32987284.

Allegretti, J., Kassam, Z., Mullish, B., Chiang, A., Carrellas, M., & Hurtado, J. et al. (2019). Effects of Fecal Microbiota Transplantation With Oral Capsules in Obese Patients. Clinical Gastroenterology And Hepatology. doi:10.1016/j.cgh.2019.07.006

Fischer, M., Sipe, B., Torbeck, M., Xu, H., Kassam, Z., & Allegretti, J. R. (2017). Does fecal microbiota transplantation from an obese donor lead to weight gain? A case series of 70 recipients. Gastroenterology, 152(5), S1004.

Beglinger C, Borgwardt S, Raes J, Schmidt A, Lang UE. Fecal Microbiota Transplantation (FMT) as an Adjunctive Therapy for Depression-Case Report. Front Psychiatry. 2022 Feb 17;13:815422. doi: 10.3389/fpsyt.2022.815422. PMID: 35250668; PMCID: PMC8891755.

Watane A, Cavuoto KM, Rojas M, Dermer H, Day JO, Banerjee S, Galor A. Fecal Microbial Transplant in Individuals With Immune-Mediated Dry Eye. Am J Ophthalmol. 2022 Jan;233:90-100. doi: 10.1016/j.ajo.2021.06.022. Epub 2021 Jun 30. PMID: 34214453; PMCID: PMC8678170.

Aggarwala V, Mogno I, Li Z, Yang C, Britton GJ, Chen-Liaw A, Mitcham J, Bongers G, Gevers D, Clemente JC, Colombel JF, Grinspan A, Faith J. Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes. Nat Microbiol. 2021 Oct;6(10):1309-1318. doi: 10.1038/s41564-021-00966-0. Epub 2021 Sep 27. PMID: 34580445.

Diener, C., Reyes-Escogido, M., Jimenez-Ceja, L., Matus, M., Gomez-Navarro, C., & Chu, N. et al. (2021). Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort. Frontiers In Endocrinology, 11. doi: 10.3389/fendo.2020.602326

Fujimoto K, Kimura Y, Allegretti JR, Yamamoto M, Zhang YZ, Katayama K, Tremmel G, Kawaguchi Y, Shimohigoshi M, Hayashi T, Uematsu M, Yamaguchi K, Furukawa Y, Akiyama Y, Yamaguchi R, Crowe SE, Ernst PB, Miyano S, Kiyono H, Imoto S, Uematsu S. Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. Gastroenterology. 2021 Feb 9:S0016-5085(21)00400-5. doi: 10.1053/j.gastro.2021.02.013. Epub ahead of print. PMID: 33577875.

Ianiro G, Mullish BH, Hvas CL, Segal JP, Kuijper EJ, Costello SP, Kelly CR, Allegretti JR, Fischer M, Iqbal TH, Satokari R, Kao D, van Prehn J, Ng SC, Bibbò S, Baunwall SMD, Quraishi MN, Sokol H, Zhang F, Keller J, Masucci L, Quaranta G, Kassam Z, Sanguinetti M, Tilg H, Gasbarrini A, Cammarota G. SARS-CoV-2 vaccines and donor recruitment for FMT. Lancet Gastroenterol Hepatol. 2021 Feb 8:S2468-1253(21)00032-7. doi: 10.1016/S2468-1253(21)00032-7. Epub ahead of print. PMID: 33571456.

Santiago M, Olesen SW. 16S rRNA sequencing of samples from universal stool bank donors. BMC Res Notes. 2021 Mar 23;14(1):108. doi: 10.1186/s13104-021-05520-z. PMID: 33757553; PMCID: PMC7988957

Serrano-Villar S, Talavera-Rodríguez A, Gosalbes MJ, Madrid N, Pérez-Molina JA, Elliott RJ, Navia B, Lanza VF, Vallejo A, Osman M, Dronda F, Budree S, Zamora J, Gutiérrez C, Manzano M, Vivancos MJ, Ron R, Martínez-Sanz J, Herrera S, Ansa U, Moya A, Moreno S. Fecal microbiota transplantation in HIV: A pilot placebo-controlled study. Nat Commun. 2021 Feb 18;12(1):1139. doi: 10.1038/s41467-021-21472-1. PMID: 33602945.

Zaman A, Qazi T, Pai P, Peters P, Nicolaysen S, Olesen SW. Carriage rates of multidrug-resistant organisms among prospective stool donors. Lancet Infect Dis. 2021 Apr;21(4):454-455. doi: 10.1016/S1473-3099(21)00091-8. PMID: 33773125.

Gerardin Y, Timberlake S, Allegretti JR, Smith MB, Kassam Z. Beyond fecal microbiota transplantation: Developing drugs from the microbiome. J Infect Dis. 2020 Dec 17:jiaa700. doi: 10.1093/infdis/jiaa700. Epub ahead of print. PMID: 33330910.

Ianiro, G., Mullish, B., Kelly, C., Kassam, Z., Kuijper, E., & Ng, S. et al. (2020). Reorganisation of faecal microbiota transplant services during the COVID-19 pandemic. Gut, gutjnl-2020-321829. doi: 10.1136/gutjnl-2020-321829

Ianiro, G., Mullish, B., Kelly, C., Sokol, H., Kassam, Z., & Ng, S. et al. (2020). Screening of faecal microbiota transplant donors during the COVID-19 outbreak: suggestions for urgent updates from an international expert panel. The Lancet Gastroenterology & Hepatology. doi:10.1016/s2468-1253(20)30082-0

Lötstedt B, Boyer D, Visner G, Freiberger D, Lurie M, Kane M, DiFilippo C, Lundeberg J, Narvaez-Rivas M, Setchell K, Alm E, Rosen R. The impact of gastrointestinal dysmotility on the aerodigestive microbiome of pediatric lung transplant recipients. J Heart Lung Transplant. 2020 Dec 5:S1053-2498(20)31860-X. doi: 10.1016/j.healun.2020.11.013. Epub ahead of print. PMID: 33349521.

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Mendez, R., Watane, A., Farhangi, M., Cavuoto, K., Leith, T., & Budree, S. et al. (2020). Gut microbial dysbiosis in individuals with Sjögren’s syndrome. Microbial Cell Factories, 19(1). doi:10.1186/s12934-020-01348-7